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RESEARCH |
Department of Animal Sciences, University of Florida, PO Box 110910, Gainesville, Florida 32611, USA
Correspondence should be addressed to A D Ealy; Email: ealy{at}ufl.edu
| Abstract |
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| Introduction |
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from the endometrial epithelium and thereby preventing regression of corpus luteum and return to estrus (Demmers et al. 2001, Spencer et al. 2004). IFNT also controls the expression of several uterine-derived factors that prepare the uterus for placental attachment, modifies the uterine immune system, and regulates early conceptus development (Austin et al. 1996, Teixeira et al. 1997, Ott et al. 1998, Spencer et al. 1998, Pru et al. 2001, Wang & Goff 2002, Gifford et al. 2008). It is not surprising, therefore, that insufficient production of IFNT or failure of the maternal system to recognize this signal leads to pregnancy failures in cattle (Roberts 1991, Thatcher et al. 1994, 2001, Inskeep & Dailey 2005). Bovine embryo production of IFNT begins at the late morula and early blastocyst stage as the trophoblast cell lineage first develops (day 6–7 of pregnancy; Hernandez-Ledezma et al. 1992, Kubisch et al. 1998). In cattle, IFNT mRNA levels peak around days 14–16 of pregnancy and remain elevated until implantation occurs around days 19–21 of pregnancy (Ealy et al. 2001, Mann et al. 2006, Robinson et al. 2006). A few selective uterine- and conceptus-derived factors are known regulators of IFNT expression (Roberts et al. 2003, 2004). One of these is fibroblast growth factor 2 (FGF2). FGF2 is expressed by the luminal and glandular epithelium and detected in the uterine lumen of cows and ewes throughout the estrous cycle and early pregnancy (Michael et al. 2006, Ocon-Grove et al. 2008). Studies using a bovine trophectoderm cell line (CT1) and in vitro-produced (IVP) bovine blastocysts reveal that supplementation with FGF2 increases IFNT mRNA and protein levels (Michael et al. 2006, Rodina et al. 2008).
FGF2, also known as basic FGF, was the first identified member of what is now a large family of FGFs. At least 22 genes encode multiple FGFs in the human and mouse, and their protein products contain a variety of biological activities in tissues and organs (Powers et al. 2000, Itoh & Ornitz 2004, 2008). These FGFs interact with a group of tyrosine kinase receptors known as FGF receptors, or FGFRs. Four genes encode these receptors (FGFR1-4), and alternative splicing in extracellular regions generates a variety of receptor isotypes (Powers et al. 2000, Kim et al. 2001, Sleeman et al. 2001, Bottcher & Niehrs 2005). One of these splicing events occurs within the third immunoglobulin (Ig)-like domains of FGFR1-3, where splicing one or two exons from the coding transcript generates receptors subtypes termed IgIIIb and IgIIIc. These spliced variants recognize different ligands (Johnson et al. 1991, Werner et al. 1992, Powers et al. 2000). For example, the IgIIIb form of FGFR2 (R2b) interacts primarily with FGF1, 3, 7, 10, and 22 whereas the IgIIIc form (R2c) interacts with FGF1, 2, 4, 6, and 9 (Powers et al. 2000, Itoh & Ornitz 2004).
Several FGFs and FGFRs are associated with early conceptus development in mammals. FGF2 increases trophectoderm outgrowth size in mice and stimulates gastrulation in rabbit conceptuses (Haimovici et al. 1991, Hrabe et al. 1995, Taniguchi et al. 1998). In the pig, uterine-derived FGF7 acting through its receptor, R2b, stimulates trophectoderm proliferation (Ka et al. 2001). In mice, FGF4-induced activation of its receptor partner, R2c, is critical for maintaining a trophoblast stem cell lineage that supports normal placental development (Feldman et al. 1995, Arman et al. 1998). FGF4 supplementation is required to prevent mouse trophoblast cell differentiation during culture (Tanaka et al. 1998, Hughes et al. 2004). This type of supplementation is not needed to maintain bovine trophectoderm in culture. They continue to proliferate without differentiating for extensive periods in culture (Talbot et al. 2000, 2007, Kubisch et al. 2001, Shimada et al. 2001).
Bovine and ovine conceptuses produce multiple FGFs. Transcripts for FGF2 and several FGFR spliced variants are detected in elongated ovine conceptuses (Ocon-Grove et al. 2008). Also, transcripts for FGF1, 2, 7, and 10 and several FGFRs exist in post-attachment stage placentae in sheep and cattle (Chen et al. 2000, Pfarrer et al. 2006). These FGFs likely facilitate placental development in a variety of ways throughout gestation. This laboratory is specifically interested in uncovering the actions of these FGFs as bovine conceptuses develop and begin to attach to the uterine lining early in pregnancy. The overall objectives of this work were to identify the various FGFs and FGFRs expressed in elongating pre-attachment bovine conceptuses and determine if these FGFs contain the ability to regulate conceptus development and/or mediate IFNT production during pre-attachment development.
| Results |
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Expression and abundance of FGF1, 2, 7, and 10 in bovine conceptuses
End-point RT-PCR also was used to determine if FGF1, 2, 7, and 10 are expressed in day 17 bovine conceptuses (Fig. 3). Transcripts for FGF1, 2, and 10 were detected in all three day 17 bovine conceptus RNA samples were examined. FGF1 and 2 transcripts but not FGF10 also were detected in CT1 cell RNA. FGF7 was not amplified in day 17 conceptus and CT1 samples but was detected in control samples (endometrium and lung). Bovine endometrium was included as a positive control based on previous work describing endometrial FGF1, 2, 7, and 10 expression in cyclic and pregnant cows and ewes (Chen et al. 2000, Pfarrer et al. 2006, Michael et al. 2006, Ocon-Grove et al. 2008). DNA sequencing verified that each PCR product represented the FGFs of interest (data not shown). Smaller, less intense PCR products were observed in some of the FGF1 reactions (Fig. 3). These products were not sequenced, and this secondary product was not detected when new primers were designed and used for qRT-PCR (see below).
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85% of the FGF transcripts among the three specific FGFs examined in these conceptuses.
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A subsequent study was completed to determine if FGF1, 2, and 10 supplementation influences development and IFNT expression in bovine blastocysts (Fig. 6). Individual IVP-blastocysts were placed in medium drops containing 50 ng/ml rbFGF1 or rbFGF2, 50 or 500 ng/ml rhFGF10, or no FGF treatment (control) and IFNT mRNA abundance (Fig. 6A) and blastomere numbers (Fig. 6B) were determined after 24 and 48 h respectively. Incubation with medium containing 50 ng/ml rbFGF1 or 2 increased (P<0.05) IFNT mRNA abundance compared with the control. Blastocysts required 500 ng/ml rhFGF10 to observe this effect. Blastomere numbers, as determined by quantifying the number of stained nuclei in blastocysts after 48 h exposure to FGF treatment, were not affected by any of the FGF proteins at any of the doses examined.
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| Discussion |
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Bovine conceptuses contain the same FGFRs as elongating ovine conceptuses (Ocon-Grove et al. 2008). In addition, this work identified the expression of R4 in bovine IVP-blastocysts and elongated conceptuses. Amplifying the IgIII region for each FGFR permitted the identification of specific FGFR spliced variants (R1c, R2b, R3c). It remains possible that additional variant forms for R1, 2, and 3 exist in bovine conceptuses and perhaps these subtypes could have been identified if additional cloned products were sequenced or if receptor subtype-specific primer sets were employed. That being said, verifying the presence of R2b throughout early bovine conceptus development provided the impetus for focusing on ligands that interact with this receptor subtype. Investigating this receptor isoform was of particular interest because the R2b and R2c subtypes are implicated in regulating trophectoderm development in other species (Feldman et al. 1995, Arman et al. 1998, Ka et al. 2001).
The primary ligands for R2b are FGF1, 3, 7, 10, and 22 (Ornitz 2000, Powers et al. 2000). In this work, transcripts for FGF1 and 10 were detected, whereas FGF7 transcripts were absent in bovine conceptuses. Tissue-specific expression of FGF3 and 22 is highly restrictive in other species (e.g., cerebellum, retina, and inner ear for FGF3; cerebellum and skin for FGF22; Wilkinson et al. 1989, Umemori et al. 2004, Komi-Kuramochi et al. 2005). Therefore, these FGFs were not examined in this work. Transcript levels of FGF1 were low throughout bovine conceptus development, whereas FGF10 mRNA concentrations were low or non-existence on or before day 11 but were readily apparent in day 14 and 17 conceptuses. The relative amount of FGF10 mRNA rivaled that of FGF2 in day 14 conceptuses and represented to predominant FGF transcript in day 17 conceptuses. Chen et al. (2000) identified that the extraembryonic mesoderm is the primary site of FGF10 expression in ovine conceptuses. The extraembryonic mesoderm emerges from the epiblast (i.e., the gastrulating inner cell mass) around days 14–16 of pregnancy in cattle and soon thereafter extends between the trophectoderm and endoderm to establish the inner chorionic layer and the outer yolk sac layer (Betteridge & Flechon 1988, Hue et al. 2001, Maddox-Hyttel et al. 2003, Degrelle et al. 2005, Robinson et al. 2006). Although, localization studies were not completed herein to verify the sources of FGF10 expression during conceptus elongation, our assessment of FGF10 mRNA abundance is supportive of the concept that the profound rise in FGF10 expression in day 14 and 17 conceptuses stems from the formation and expansion of extraembryonic mesoderm.
It is interesting that the ontogeny of conceptus-derived FGF10 expression resembled that of IFNT. Relative abundances for both transcripts were low in day 11 conceptuses and increased profoundly at days 14 and 17 of pregnancy. Since mesoderm formation occurs around the same time as conceptus elongation and maximal IFNT expression (Ealy et al. 2001, Mann et al. 2006, Robinson et al. 2006), it is possible that a product of this tissue, such as FGF10, could be required for maximal IFNT expression as well as other aspects of early conceptus development and elongation. Timely epiblast development certainly is linked to conceptus elongation and survival. Bovine embryos derived from IVP and nuclear transfer (NT) usually have lower survival rates than their in vivo-generated counterparts after transfer, and fewer IVP and NT embryos contain epiblasts at day 14 of pregnancy (Bertolini et al. 2002, Alexopoulos et al. 2008). Also, fewer pregnancies resulted from the transfer of day 14 bovine conceptuses containing either non-intact or undetectable epiblasts as compared with the transfer of conceptuses containing intact epiblasts (Fischer-Brown et al. 2004). Further work is needed to determine if paracrine-acting factors produced by the epiblast, and more specifically by the newly formed mesoderm, promote trophectoderm proliferation and gene expression.
Tissue localization studies were not completed in this work, but the trophectoderm is likely one site of FGF1 and 2 production in elongating conceptuses. FGF1 and 2 mRNA are detected in CT1 cells and localized to the trophectoderm of mid-gestation bovine placentae (Pfarrer et al. 2006). Likewise, each of the four FGFR subtypes identified in bovine blastocysts and elongating conceptuses probably are expressed in trophectoderm since they were detected in CT1 cells. This certainly is the case for the R2b subtype. Its transcripts localize to ovine and bovine trophectoderm during peri- and post-attachment development (Chen et al. 2000, Pfarrer et al. 2006). R2b is also expressed by the uterine epithelium in ewes where it appears to play a central role in regulating uterine activity during pregnancy by interacting with stromal-derived FGF10 (Chen et al. 2000). It is possible, but unlikely that this uterine source for FGF10 is released into the uterine lumen. Most FGFs, including FGF10, contain high affinities for heparan sulfate proteoglycans and remain sequestered within the extracellular matrix of tissues rather than being released into the blood or luminal cavities (Ornitz 2000, Powers et al. 2000). Very little to no FGF10 is produced by luminal and glandular epithelium. Cell lines developed from ovine endometrial epithelium contain FGF10 mRNA (Chen et al. 2007), but in situ studies did not detect FGF10 transcripts in luminal or glandular epithelium during diestrus and early pregnancy (Chen et al. 2000). By contrast, FGF2 is produced by the endometrial epithelium and can be found in the uterine lumen during early pregnancy (Michael et al. 2006, Ocon-Grove et al. 2008). It remains unknown, if uterine-derived FGF1 is released into the uterine lumen. FGF1 is produced by bovine luminal epithelium during mid-gestation (Pfarrer et al. 2006) and, therefore, may have a similar uterine expression pattern as FGF2 prior to placental attachment.
All of the recombinant FGF preparations were able to stimulate IFNT mRNA and/or protein levels in bovine trophectoderm and IVP-blastocysts. FGF1 and 2 proteins were similar in their ability to stimulate IFNT mRNA, whereas as much as tenfold more FGF10 was required in some cases to elicit biological responses on trophectoderm and blastocysts. It is unclear why FGF10 contained slightly lower biological activity than other FGFs. Perhaps using a human recombinant FGF10 protein that contains a good but not great sequence identity to its bovine homolog caused this effect (91.6% identical amino acid sequence identity to bovine FGF10). Alternatively, issues with freeze/thawing the recombinant preparation, post-thawing handling, and/or protein degradation rate during culture could have contributed to this outcome. Regardless of the reason, rhFGF10 did contain biological activity on both CT1 cells and IVP blastocysts. Therefore, its bovine homolog is probably also capable of stimulating IFNT expression in bovine trophectoderm.
None of the FGF proteins examined affected trophectoderm and blastomere cell numbers. Previous work consistently observed little to no mitogenic effect of boFGF2 (Michael et al. 2006, Rodina et al. 2008). One interpretation of these findings is that the FGFs under investigation are likely not serving an active role in regulating cell proliferation rate early in conceptus development. However, the ability of selective FGFs to influence early bovine embryo development (i.e., blastocyst formation, blastocyst quality, and ratio of trophoblast/inner cell mass cells) have yet to be fully explored.
It still remains unclear whether one or multiple FGFR subtypes dictate FGF responses in bovine trophectoderm. FGF1 associates equally well with each of the FGFR variants expressed in bovine conceptuses, and FGF2 has a high affinity for R1c and R3c and a moderate affinity for R2b (Ornitz 2000, Powers et al. 2000, Itoh & Ornitz 2004). FGF10 is more selective in its receptor partner binding interactions and generally acts through either R2b or R1b (Lu et al. 1999, Powers et al. 2000). The latter receptor subtype was not detected in conceptus and CT1 screens. Recombinant FGF7was included in one CT1 study to determine if its interaction with R2b was sufficient to induce an IFNT mRNA response. FGF7 is not expressed in pre- and peri-attachment bovine conceptuses and endometrial sources of FGF7 are localized too deep within the stromal region to permit FGF7 from being secreted into the uterine lumen (Chen et al. 2000). However, FGF7 acts exclusively through R2b (Lu et al. 1999, Powers et al. 2000), and its ability to increase IFNT mRNA levels in CT1 cells implicates R2b as one of the receptor subtypes responsible for FGF actions on trophectoderm. This observation does not exclude the possibility that other FGFRs also may participate in directing the biological activities of other FGFs on bovine trophectoderm, but the relative importance of other FGFRs in regulating IFNT expression and other critical actions during conceptus development remains to be fully explored.
In conclusion, current findings provide new insight for how conceptus-derived factors may control IFNT expression during early pregnancy in cattle. Multiple FGFRs are expressed by elongating bovine conceptuses, and at least one of these receptor subtypes, R2b, is involved with mediating FGF-induced increases in IFNT mRNA and protein production in bovine trophectoderm. Also, several FGFs are expressed by bovine conceptuses. Of particular note is FGF10, a ligand for R2b whose expression increases in day 14 and 17 conceptuses coincident with peak IFNT expression. This and potentially other conceptus-derived FGFs as well as uterine-derived FGFs likely are acting in concert to impact IFNT production from bovine trophectoderm. This could well be an essential component for the establishment and maintenance of pregnancy in cattle and sheep.
| Materials and Methods |
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Conceptuses at day 11 and 14 post-insemination were collected non-surgically after providing an epidural injection of 2% (wt/vol) lidocaine (Sparhawk Laboratories Inc., Shawnee, Mission, KS, USA) by inserting a latex Foley catheter (Agtech Inc.) through the cervix and flushing each horn with 250–500 ml flush solution (Dulbecco's PBS (DPBS; Invitrogen Corp., Carlsbad, CA, USA) with 0.04% BSA (BSA)). Conceptuses at day 17 post-insemination were collected during slaughter at the UF Meats Laboratory by excising reproductive tracts, injecting flush solution into the anterior tip of one uterine horn and collecting fluid and conceptuses from an excised anterior portion of the other uterine horn. Flush solutions were examined macroscopically and microscopically, if needed (day 11) to collect conceptuses. All day 11 conceptuses were ovoid in shape and most could be detected in the petri dish with the naked eye. Approximately, half of the day 14 conceptuses collected were ovoid but readily visible in the petri dish with the naked eye. The remaining day 14 conceptuses were in the initial stages of elongation and ranged from 0.5 to 3 cm in length. All of the day 17 conceptuses were elongated and filamentous, ranging from 5 to 45 cm in length. Conceptuses were pooled together in small groups (n=3–5/pool) and snap-frozen in liquid nitrogen and stored at –80 °C. Each pool of the day 14 samples contained a mixture of ovoid and elongating conceptuses. Additional tissues, including endometrium, lung, and brain (hippocampus and cerebrum), were collected from cows during slaughter, snap-frozen in liquid nitrogen and stored at –80 °C until use as positive control samples.
Total cellular (tc) RNA was extracted from day 11 and day 14 conceptus pools using the RNeasy Micro kit (Qiagen Inc, Valencia, CA, USA). The RNAqueous-Midi RNA Isolation Kit (Applied Biosystems/Ambion, Austin, TX, USA) was used to extract tcRNA from d17 conceptuses. The PureLink Micro-to-Midi Total RNA Purification System with Trizol (Invitrogen Corp.) was used to extract tcRNA from other tissues. Concentration and quality of isolated tcRNA was assessed by using a NanoDro8000 spectrophotometer (Thermo Fisher Scientific, Pittsburgh, PA, USA).
Bovine in vitro embryo production
In vitro maturation, fertilization, and cultures procedures were used to generate bovine blastocysts (Rivera & Hansen 2001, Moreira et al. 2002, Paula-Lopes & Hansen 2002). Briefly, oocytes from slaughterhouse derived ovaries were matured and fertilized in vitro with Holstein semen (Genex Cooperative Inc). After fertilization, presumptive zygotes were placed in groups of 25–30 and incubated in 5% CO2/5%O2/90%N2 at 38.5 °C in 50 µl drops of either synthetic oviduct fluid (SOF; Chemicon International/Millipore, Billerica, MA, USA) or modified potassium simplex optimized medium (mKSOM; Caisson Laboratories, North Logan, UT, USA), depending on the study. Both media were supplemented with 0.3% (w/v) essentially fatty acid free BSA (Sigma Aldrich, St Louis, MO, USA). In one study, expanded and hatched blastocysts formed on day 8 post-fertilization after culture in mKSOM were placed in groups (n=10–18), snap-frozen in liquid nitrogen and stored at –80 °C. TcRNA was extracted using the RNeasy Micro kit (Qiagen Inc.) and quantified by using a NanoDro8000 spectrophotometer (Thermo Fisher Scientific).
In a second set of studies, blastocysts identified on day 8 post-fertilization were collected and washed in DPBS containing 1 mg/ml polyvinyl pyrolidone (PVP; Thermo Fisher Scientific). Individual blastocysts were placed in 30 µl drops Medium 199 (M199) containing 2.5% (v/v) fetal bovine serum (FBS; Invitrogen Corp.) and 10 µM Gentamycin (Sigma Chemical Co.; Rodina et al. 2008). The stage of blastocyst development (non-expanded or expanded) was used to balance treatment combinations. Medium was supplemented with 50 ng/ml recombinant (r) bovine (b) FGF1 (R&D Systems), 50 ng/ml rbFGF2 (R&D Systems Minneapolis, MN, USA), 50 or 500 ng/ml r human (h) FGF10 (Invitrogen Corp.) or carrier only (M199 containing 1% (w/v) BSA). In one study, blastocysts were incubated at 38.5 °C in 5% CO2/5%O2/90%N2 for 24 h, then washed once in PBS/PVP, snap-frozen in liquid nitrogen and stored at –80 °C. In a companion study, blastocysts were incubated at the aforementioned conditioned for 48 h then were washed once in PBS/PVP and fixed by incubation in 4%(w/v) paraformaldehyde (Polysciences Inc., Warrington, PA, USA) for 10 min and processed for determining blastomere numbers with Hoechst 33342 staining and epifluorescence microscopy (Rodina et al. 2008). Number of Hoechst-positive nuclei was quantified with NIS-Elements software (Nikon Instruments Inc, Melville, NY, USA).
Bovine trophectoderm cell (CT1) culture
Cells were propagated as described previously (Talbot et al. 2000, Michael et al. 2006) in DMEM containing 10% FBS and other supplements (4.5 g/l D-glucose, non-essential amino acids, 2 mm glutamine, 2 mm sodium pyruvate, 55 µm β-mercaptoethanol, 100 U/ml penicillin G, 100 µg/ml streptomycin sulfate, and 250 ng/ml amphoterin B) on Matrigel Basement Membrane Matrix (BD Biosciences, Bedford, MA, USA) at 38.5 °C in 5% CO2 in air. CT-1 cells were seeded onto 12-well plates. Upon reaching
50% confluence, fresh DMEM lacking FBS but containing all other supplements and a serum substitute (insulin/transferrin/selenium; ITS; Invitrogen Corp.) were added to cultures. After 24 h, fresh serum-free DMEM containing 0, 0.5, 5, 50, or 500 ng/ml of either rbFGF1, rbFGF2, or rhFGF10 were provided to cultures (n=2 wells/FGF treatment/replicate experiment). Each treatment, including controls contained 50 µg/ml BSA as a carrier protein. For some studies, tcRNA was extracted 24 h after FGF supplementation using the PureLink Micro-to-Midi Total RNA Purification System with Trizol (Invitrogen Corp.) following manufacturer's parameters (n=4 replicate experiments). TcRNA was stored at –80 °C until further use.
In another study, conditioned medium was collected and stored at –20 °C after 48 h exposure to FGF treatments (n=5 replicate experiments). Viable cell number was determined by using the Cell Titer 96 AQueous One Solution Cell Proliferation Assay (Promega, Madison, WI, USA). Absorbance was measured at 490 nm. A cytopathic antiviral assay was used to determine concentrations of biologically active IFNT in conditioned medium (Roberts et al. 1989, Michael et al. 2006, Rodina et al. 2008). Unconditioned medium and FGF preparations did not contain antiviral activity. Data are expressed as ng/ml of biologically activity boIFNT based on the specific activity of the rbIFNT preparation used as the standard (8.03x108 IU/mg) and normalized by the cell proliferation assay absorbance reading to account for well to well variations in CT1 cell density.
End-point RT-PCR
All samples were incubated with RNase-free DNase (Applied Biasystems Ambion Inc.) for 30 min at 37 °C then heat-denatured at 75 °C for 10 min immediately before RT. The SuperScript III First,-Strand Synthesis System Kit (Invitrogen Corp.) and random hexamers were used for RT of tcRNA. Non-reverse transcribed DNase-treated RNA was included as a negative control for each sample. Gene-specific primer sets were used to amplify products for FGFR1, 2, 3, or 4 and FGF1, 2, 7, or 10 (see Supplementary Table 1, which can be viewed online at www.reproduction-online.org/supplemental/). A primer pair specific for β-actin (ACTB) cDNA was included as a positive control in these reactions (Supplementary Table 1). PCR amplification was performed using either PfuUltr High-Fidelity DNA Polymerase (Stratagene) or ThermalAc DNA Polymerase (Invitrogen Corp). From 30 to 45 cycles of denaturation (95 °C for 1 min), annealing (55–62 °C for 1 min; depending on the primer set) and DNA synthesis (72 or 74 °C for 1 min; depending on the polymerase) followed by a DNA polishing stage (72–74 °C for 10 min) were completed. The presence and approximate size of amplified products were determined by electrophoresis in an agarose gel (1.2% (w/v)) containing ethidium bromide (100ng/mL) and visualized on an u.v. light box.
Amplicons of the desired size were excised from gels and ligated into the pCR4-Blunt TOPO vector (Invitrogen Corp). Ligation reactions were used to transform chemically competent TOP10 E. coli (Invitrogen Corp). Selected colonies were propagated and purified clones were sequenced in both directions using vector primer sets at the University of Florida DNA Core Facility. Multiple clones from at least three different conceptus or CT1 samples were sequenced to verify that amplified products represented the transcript of interest. Also, DNA sequencing was used to identify specific splice variant forms of FGFR1-3 in bovine conceptuses and CT1 cells.
Quantitative (q), real-time RT-PCR
The abundance of FGF and IFNT transcripts in bovine conceptus and CT1 cells was determined by qRT-PCR. All samples were incubated with RNase-free DNase (Applied Biasystems Ambion Inc., Foster sites CA, USA) as described previously before RT with the High Capacity cDNA Archive Kit and random hexamers (Applied Biosystems Inc).
For one study with IVP-blastocysts, primers specific for boIFNT and 18S (internal control; Supplementary Table 2, which can be viewed online at www.reproduction-online.org/supplemental/) were used in combination with a SybrGreen detector system (Applied Biosystems Inc.) and a 7300 Real-Time PCR System (Applied Biosystems Inc.) to quantify IFNT mRNA concentrations. After an initial activation/denaturation step (50 °C for 2 min; 95 °C for 10 min), 40 cycles of a two-step amplification protocol (60 °C for 1 min; 95 °C for 15 s) were completed. A dissociation curve analysis (60–95 °C) was used to verify the amplification of a single product. Each blastocyst sample was run in duplicate reactions and a third reaction lacking exposure to reverse transcriptase was included for each sample to verify if they were free of genomic contamination. The comparative threshold cycle (Ct) method was used to quantify the abundance of IFNT mRNA relative to that of 18S (Michael et al. 2006). In brief, the average
Ct value for each sample was calculated (IFNTCt – 18SCt) and used to calculate the fold-change in the relative abundance of IFNT mRNA.
A TaqMan-based qRT-PCR approach was used to quantify the abundance of FGF1, FGF2, FGF10, IFNT, and 18S RNA (internal RNA loading control) in other studies. Primers and probes specific for each FGF transcript and IFNT mRNA were synthesized (Applied Biosystems Inc.; Supplementary Table 3, which can be viewed online at www.reproduction-online.org/supplemental/) and labeled with a fluorescent 5' 6-FAM reporter dye and 3' TAMRA quencher. The IFNT Primer/probe set was developed to recognize every known bovine and ovine IFNT isoform (Michael et al. 2006). After an initial activation/denaturation step (50 °C for 2 min; 95 °C for 10 min), 50 cycles of a two-step amplification protocol (60 °C for 1 min; 95 °C for 15 s) was used with TaqMan reagent (Applied Biosystems Inc.) and a 7300 Real-Time PCR System to quantify transcript levels. Abundance of 18S RNA was determined using the 18S RNA Control Reagent Kit (Applied Biosystems Inc.) containing a 5'-VIC-labelled probe with a 3'-6-carboxy-tetramethylrhodamine quencher. Each RNA sample was analyzed in duplicate (conceptus study) or triplicate (CT1 study) reactions (10–50 ng tcRNA for blastocysts and day 11 conceptuses; 50 ng tcRNA for day 14 and 17 conceptuses and CT1 cells). An additional reaction lacking exposure to the reverse transcriptase was included for each sample to verify if they were free of genomic DNA contamination.
The
Ct method was used to contrast abundance of transcripts for FGFs and IFNT relative to 18S RNA in all but one study. In one study, relative amounts of 18S RNA changed across stages of conceptus development, so a relative standard curve approach was used in combination with the amount of tcRNA used in qRT-PCR reactions to describe relative abundances for individual FGFs and IFNT during conceptus development (Larionov et al. 2005, Cikos et al. 2007; ABI Prism Sequence Detection System User Bulletin No. 2; Applied Biosystems Inc). One of the day 17 conceptus RNA samples was used a standard sample, and four doses of this preparation (2, 10, 50, 250 ng tcRNA/reaction) was included in each real-time run. The slope and intercept for each FGF, IFNT, and 18S curve was used to convert raw Ct values into values that represented the ng of control tcRNA required to equal that detected in each sample by solving the formula:
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Statistical analyses
All analyses were completed by ANOVA (ANOVA) using the general linear model of the Statistical Analysis System (SAS Institute Inc, Cary, NC, USA). Differences in individual means were partitioned further by completing pair-wise comparisons (probably of difference analysis). When analyzing qRT-PCR data transformed using the
Ct method, the
Ct values were used for the statistical analyses but data are presented as fold differences from control values. Antiviral activity of CT1 conditioned medium was log-transformed and normalized based on predicted cell number before analysis. Results are presented as arithmetic means±S.E.M.s.
| Declaration of interest |
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| Funding |
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| Acknowledgements |
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Received September 18, 2008
First decision October 8, 2008
Accepted November 7, 2008
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