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The Rowett Research Institute, Greenburn Road, Bucksburn, Aberdeen, AB21 9SB, Scotland
Correspondence should be addressed to W D Rees; Email: W.Rees{at}rowett.ac.uk
| Abstract |
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| Introduction |
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| Interactions between nutrients and gene expression in cells |
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Leucine zipper proteins
Cells respond to nutrient deficiency with the appearance of mRNAs normally found at low levels in rapidly dividing cells. The CHOP-10/gadd153 (C/EBP homologous protein 10/growth arrest and DNA damage gene 153) mRNA is upregulated within 4 hours of cells being exposed to media deficient in glucose, amino acids (Jousse et al. 2004) or other key components such as choline (van der Sanden et al. 2004). The expression of CHOP-10/gadd153 is regulated by the mTOR pathway (Entingh et al. 2001) and also by transcription factors from the activating transcription factor (ATF) family (Averous et al. 2004). The ATF-4 factors are produced in response to the accumulation of unfolded proteins in the endoplasmic reticulum through premature termination of the peptide chain, a failure of glycosylation or other defects in the export process. Unfolded proteins activate a series of protein kinases known as the unfolded protein response (UPR) (Zhang & Kaufman 2004). These kinases phosphorylate the alpha subunit of translation initiation factor 2 (eIF2-alpha), one of the proteins that control the binding of ribosomes to mRNA. Phosphorylation of eIF2-alpha inhibits the translation of most mRNAs and suppresses total protein synthesis (Harding et al. 2000). However, some mRNAs, including that for the transcription factor ATF-4, are still able to associate with ribosomes. Therefore the UPR promotes translation of ATF-4 and stimulates CHOP-10/gadd153 transcription (Harding et al. 2003).
The product of the CHOP-10/gadd153 mRNA is a nuclear protein related to the CCAAT/enhancer-binding protein (C/EBP) family of transcription factors. All of these proteins have a leucine rich region (leucine zipper) and a DNA binding domain (Ramji and Foka 2002). Two C/EBP molecules bind together through the leucine zipper to form a dimer, which activates transcription from specific DNA sequences in the promoters of target genes. Homo-and hetero- dimers of the C/EBP transcription factors are involved in a well characterised cascade of gene expression which leads to the terminal differentiation of a number of cell types including hepatocytes and adipocytes (Fig. 2
) (Lane et al. 1999). One of the key components in this cascade is C/EBP-beta which is expressed during the process of cell commitment (Ramji and Foka 2002). When the CHOP-10/gadd153 protein is induced, it can form dimers with other members of the C/EBP family of transcription factors including C/EBP-beta. This disrupts the normal pattern of C/EBP-beta mediated gene transcription and initiates the expression of a new series of mRNAs (Wang et al. 1998). Under extreme circumstances the changes in gene expression mediated by CHOP-10/gadd153 leads to the death of the cell through apoptosis (Zinszner et al. 1998).
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Nuclear hormone receptor super family
Fatty acids and other lipophilic molecules control the expression of a network of target genes through interactions with members of the nuclear hormone receptor super family (Olefsky 2001). These receptors can be broadly categorised according to their ligands. For example, one family of these receptors, retinoic acid receptor (RAR) and retinoid X receptor (RXR) bind retinoic acid (derived from vitamin A) and play an essential role in regulating the differentiation of numerous cell types (Zile 2001). The nuclear receptor superfamily also includes receptors for thyroid hormones, vitamin D and liver X receptor (LXR). Another group of receptors from this family associated with cellular responses to fatty acids are the PPARs (Kota et al. 2005). These receptors modulate lipid and glucose metabolism by acting as transcriptional activators following the binding of fatty acids or fatty acid derived molecules such as prostaglandin J2 (Ferre 2004, Evans et al. 2004). The PPAR family comprises three isoforms that are expressed at different stages of development and in different tissues (van Bilsen et al. 2002). In the adult PPAR-alpha is expressed in liver, heart and muscle, PPAR-gamma is highly expressed in adipose tissue and the third isoform PPAR-delta (also known as PPAR-beta) is ubiquitously expressed in many tissues.
Members of the superfamily can form hetero-dimers with one another, thus for example; PPARs can form dimers with the retinoic acid receptors, the thyroid hormone receptor and the vitamin D receptor. Heterodimers of LXR/RXR play a particularly important role as the dominant activators of the sterol regulatory element-binding proteins (SREBPs). These membrane-bound transcription factors from the basic helix-loop-helix leucine zipper family are highly expressed in liver and adipose tissue where they are key regulators of cholesterol and fatty acid synthesis (Yoshikawa et al. 2001, Yoshikawa et al. 2003). In adults the SREBP-1c isoform responds to dietary glucose and controls hepatic lipogenesis through its close links to the signalling cascade downstream of the insulin receptor (Osborne 2000). Another isoform, SREBP-2 is a key regulator of cholesterol biosynthesis. Through their impact on factors such as SREBPs the nuclear hormone receptors are essential in the nutrient mediated regulation of lipid metabolism.
The nuclear receptors share common structural motifs, which includes areas for DNA recognition, ligand binding and cofactor interactions. The DNA recognition domain binds to specific nucleotide response elements in enhancer or promoter regions of the target genes and is able to activate transcription after ligand binding (Privalsky 2004). The co-factor binding sites enable the dimers to form complexes with co-repressor proteins which catalyse post-translational modifications of histones and other proteins to maintain the local chromatin structure and facilitate gene transcription. These modifications of chromatin may be an important factor in prenatal metabolic programming.
| Gene nutrient interactions during development |
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| Changes in the growth of the developing oocyte or embryo |
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Oocyte maturation
The early stages of development post-fertilisation depend on the quality of the oocyte. Data from oocytes matured in vitro suggests that several nutritional and endocrine factors influence follicle development (Rodriguez & Farin 2004). In particular the successful maturation of the oocyte is critically dependent on interactions with the surrounding granulosa cells (Kim et al. 1997). There is evidence that mTOR, C/EBPs and PPARs are all involved in regulating granulosa cell function. These may provide a mechanism to suppress ovulation in response to severe nutritional imbalances such as those induced by famine or anorexia. However, it is also possible that inappropriate oocyte maturation may lead to subtle changes in post-fertilisation development.
Cell proliferation following stimulation with follicle stimulating hormone is dependent on the mTOR pathway to promote the phosphoinositol 3-kinase-dependent activation of p70 S6 kinase (Alam et al. 2004). In addition to mTOR, follicular differentiation is also dependent on the C/EBP transcription factors. Deletion of the C/EBP-beta gene leads to failure of follicular development as the granulosa cells are unable to respond to luteinising hormone (Sterneck et al. 1997). There is also an important role for C/EBP-alpha and C/EBP-beta during the transition period from follicle to corpus luteum (Gillio-Meina et al. 2005). The mRNA of all three PPAR isoforms is expressed in the rat ovary, with PPAR-gamma the principal form found in the granulosa cells. Mice with a targeted deletion of the PPAR-gamma gene in oocytes and granulosa cells had a normal population of follicles, were able to ovulate and develop corpora lutea (Cui et al. 2002). This suggests that PPAR-gamma is not essential for follicular functions, however, the animals had a reduced implantation rate. It has been suggested that PPAR-gamma plays a part in regulating oocyte maturation by acting as a negative regulator of follicular growth and differentiation (Lovekamp-Swan & Chaffin 2005). All of these studies demonstrate that granulosa cells possess mechanisms to regulate oocyte maturation in response to the nutritional environment. However, at present it is not clear if changes in the maternal diet can modify oocyte maturation through these gene nutrient interactions.
Blastocyst growth
Mouse blastocyst outgrowth in vitro and probably implantation in vivo require amino acid signalling via the mTOR pathway. The presence of amino acids, and particularly leucine, in the extracellular medium stimulates mTOR activity in the blastocyst, suggesting that this pathway regulates blastocyst growth and implantation in response to the amino acid supply (Martin et al. 2003). When the kinase domain of mTOR is disrupted by homologous recombination, homozygous mutant embryos die shortly after implantation due to impaired cell proliferation showing that this is a critical developmental checkpoint for implantation (Gangloff et al. 2004, Murakami et al. 2004).
Prolonged exposure to genotoxic stress (and probably amino acid deficiency) induces the CHOP-10/gadd153 mRNA and initiates apoptosis in the blastocyst (Fontanier-Razzaq et al. 2001). This response to nutritional and environmental stress probably removes damaged cells and prevents them from proliferating through the developing fetus. The C/EBP transcription factors appear to become important following implantation where they are expressed alongside the CHOP-10/gadd153 mRNA during placental development. Mouse embryos with targeted deletions of both C/EBP-alpha and C/EBP-beta die between embryonic days 10 and 11 because of defects in the labyrinth layer of their placentas (Begay et al. 2004). However, a single copy of either C/EBP-beta, or C/EBP-alpha is sufficient to support development. This suggests that although both transcription factors function during early embryonic development there is a degree of redundancy. A targeted deletion of the PPAR-gamma gene also affects the ability to establish a labyrinth layer in the placenta (Asami-Miyagishi et al. 2004). The placenta acts as the interface between the fetus and the maternal circulation where it serves an important role in regulating fetal nutrient supply. These studies of animals with targeted deletions suggest that the C/EBP proteins regulate placental development in concert with PPARs. However, it is not known to what degree these nutrient sensitive genes have a physiological role in buffering and adapting placental development to optimise the nutrient supply to the developing fetus.
| Epigenetic modifications of chromatin structure |
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Epigenetic modifications may result from the direct effects of changes in metabolism as the process of chromatin remodelling depends on a number of products derived from intermediary metabolism such as S-adenosyl methionine (SAM), acetyl CoA and nicotinamide adenine dinucleotide (NAD(+)). The modification of cytosine residues with methyl groups derived from SAM serves two purposes, transcriptional repression and genome defence (Grace Goll & Bestor 2005). There is a growing body of evidence showing that transcriptional repression and genome defence is perturbed by changes in metabolism. Embryo culture techniques in farm animals frequently expose the preimplantation embryo to an inappropriate nutritional environment in vitro, leading to defective epigenetic programming and a number of developmental abnormalities collectively known as the large offspring syndrome (Young et al. 2001). Studies have revealed that the expression of a number of key genes is altered in these large offspring (Young & Beaujean 2004). Defects in epigenetic programming can also affect metabolism, the surviving offspring of mice produced by nuclear transfer (where the transferred nucleus undergoes extensive epigenetic reprogramming) exhibit an obese phenotype (Tamashiro et al. 2002). Many of the cytosine residues modified by methylation reside within parasitic DNA elements or retrotransposons, such as endogenous retroviruses. One of the best-studied examples is the Agouti mouse (Wolff et al. 1998). In this animal an endogenous retrovirus-like transposon sequence is inserted close to the gene coding for the Agouti protein. Normally a cryptic promoter within the retrotransposon is silenced by methylation allowing normal tissue-specific and regulated agouti expression. However, if this site is undermethylated the promoter is active and drives constitutive ectopic expression of the agouti gene, leading to yellow coat colour and obesity. It has been shown that the methylation status of these inserted viral DNA sequences can be modified by the methionine, folic acid and choline content of the maternal diet, illustrating that the extent of methylation is determined by events occurring in utero (Cooney et al. 2002). Adding additional methyl donors to the maternal diet increases methylation of the retrotransposon, suppresses ectopic gene expression and improves the outcome for the offspring. However, the wider relevance of this model still unclear and it is not known whether nutritional regulation of similar retrotransposon sequences is responsible for disease in humans.
The methylation of cytosine bases in DNA is tightly associated with modification of histone tails and other changes in chromosome structure (reviewed by Santos & Dean 2004). DNA is assembled on core histones; the tails of which are exposed on the nucleosome surface, where they are subject to a variety of enzyme-catalysed, post-translational modifications. The acetylation and methylation of histones, mediated by histone acetyl transferases and histone methyl transferases, changes the structure of the nucleosome and allows other proteins access to the DNA (Hermanson et al. 2002). A group of histone deacetylases reverses the acetylation of histones in a reaction that requires NAD(+) (Blander & Guarente 2004). These processes are essential for the differentiation of cells such as hepatocytes and adipocytes. It has been suggested that methylation and acetylation of histones introduces a histone code which acts as a form of cellular memory influencing the subsequent binding and therefore function of transcriptional activators responsible for the differentiated phenotype (Turner 2002).
Chromatin remodelling is particularly important in the oocyte and early embryo. In these cells the pattern of co-activator expression is different from that observed in somatic cells, reflecting the specialised events occurring during early development (Zheng et al. 2005). In particular the modification of chromatin with poly ADP-ribose (derived from NAD(+)) is essential for normal preimplantation development (Imamura et al. 2004). It is interesting to speculate that this requirement for NAD(+) during the early stages of development may be associated with the dependence of the pre-implantation embryo on pyruvate metabolism (Houghton & Leese 2004). The NAD(+) dependent deacetylases are also essential during the later stages of fetal development where loss of activity leads to reduced fetal growth and defects in the lung and pancreas (McBurney et al. 2003). In the liver of rat fetuses, the nutritional stresses produced by uteroplacental insufficiency produce specific changes in the association of acetylated histones with the promoters of genes dependent on PPAR (Fu et al. 2004). Nutrient sensitive transcriptional activators, such as the C/EBPs and PPARs, are able to determine local chromatin structure through interactions with co-activator proteins. This provides a second indirect route for nutritionally mediated epigenetic programming of gene expression (Jia et al. 2004).
| Post-implantation development and organogenesis |
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In contrast there is evidence that mTOR is involved in the regulation of fetal muscle development. In the adult, muscle is one of the main organs involved in the clearance of glucose and amino acids from the circulation and thus changes in muscle mass or insulin sensitivity greatly affect whole body glucose metabolism. For example, in sheep the development of muscles and skeleton was retarded in fetuses of nutrient-restricted ewes. The levels of mTOR and ribosomal protein S6 proteins were unchanged, but the phosphorylation of both proteins was reduced in muscle from nutrient-restricted fetuses. It is possible that the decrease in mTOR signalling reduces myoblast proliferation and reduces the number of secondary myofibers (Zhu et al. 2004).
The CHOP-10/gadd153 gene is not essential for the process of organogenesis as animals with a targeted deletion of the gene develop normally. This is despite it being widely expressed in fetal tissues. Data from adult animals show that the unfolded protein response, mediated though CHOP-10/gadd153, is important in regulating the apoptosis of beta cells (Oyadomari et al. 2002). The presence of misfolded insulin molecules induces the unfolded protein response (UPR) in the beta cell and leads to its destruction by apoptosis. These data suggest that this pathway is concerned with the response to stress rather than normal development. It will be interesting to see if animals with targeted deletions of CHOP-10/gadd153 show abnormal fetal development when they are exposed to nutritional stresses during gestation.
The CHOP-10/gadd153 and C/EBP genes play a pivotal role in the differentiation and final maturation of the beta cells, hepatocytes and adipocytes in vitro (Fig 2
). Studies of animals with targeted deletions of the C/EBP alpha gene show that it is not essential for the morphological development of the liver in vivo. However the expression of C/EBP-alpha is required for the expression of genes involved in the normal metabolic functions of adult liver. Animals lacking C/EBP-alpha do not express glycogen synthase and die at the neonatal stage due to hypoglycaemia (Ramji & Foka 2002). In contrast deletion of the C/EBP-beta gene leads to early embryonic lethality because it is required for the development of the placenta. The C/EBP-beta gene also plays an important part in the regulation of islet development (Lu et al. 1997). Analysis of C/EBP expression in the livers of fetuses exposed to a low protein diet fail to show any changes either in C/EBP or CHOP-10/gadd153 mRNA levels suggesting that maternal protein deficiency does not influence transcription (Maloney et al. 2005). However, other nutritional imbalances, e.g. hyperglycaemia, may induce different patterns of metabolic stress which lead to changes in CHOP-10/gadd153 expression or to changes in the C/EBP isoforms.
The role of PPARs in modulating the insulin axis has been highlighted by the development of pharmacological agonists for these receptors. Treatment with PPAR-gamma agonists improves whole body insulin sensitivity by redirecting lipid from non-adipose tissue towards adipocytes. This is accomplished by altering the expression of genes involved in lipid metabolism such as the aP2 fatty acid binding protein, the CD36 lipoprotein receptor, lipoprotein lipase as well as adipose signalling molecules such as leptin and resistin. In adults fed a high fat diet PPAR-alpha modulates islet insulin secretion and it has been suggested that it may act as a general sensor of overall tissue lipid supply (Sugden & Holness 2004). Animals with a targeted deletion of PPAR-alpha are fertile but adults have severe metabolic defects suggesting that PPAR-alpha plays a role later in development. In contrast deletion of the PPAR-gamma gene is lethal because the placenta fails to develop. When these embryos are rescued by forming chimeras, embryos with a deletion of PPAR-gamma survived showing that expression is not essential for organogenesis. However, the offspring are devoid of adipose tissue and die soon after birth (Barak et al. 1999). A targeted deletion of PPAR-gamma in the beta cells leads to islet hyperplasia in mice, however, the increase in islet mass in response to high-fat feeding does not occur (Rosen et al. 2003). Analysis of PPAR gene expression in the liver suggests that the expression of these mRNAs is low during the embryonic period (Balasubramaniyan et al. 2005). It will be interesting to see if nutritional imbalances, such as those induced by feeding high fat diets during gestation have any impact on gene expression.
The gene deletion experiments highlight the essential role of PPAR-gamma in adipogenesis. During development immature pre-adipocytes are held in an undifferentiated state through inhibition of C/EBP and PPAR expression by Wnt signalling (Ross et al. 2000, Bennett et al. 2002). In response to adipogenic stimuli pre adipose cells express C/EBP-beta and PPAR-delta. These transcriptional activators in turn initiate the expression of PPAR-gamma and C/EBP-alpha which then transcribe the genes involved in creating the complete adipocyte phenotype. Adipogenesis is controlled by a positive feedback loop, which is sensitive to long-chain, saturated, and polyunsaturated fatty acids through PPAR-gamma and to glucose through CHOP-10/gadd153 and C/EBP. Although this system is well understood in the adult there is little information on the regulation of adipogenesis during fetal development. The proliferation and differentiation of pre-adipocytes isolated from rat fetuses is not sensitive to the level of protein in the maternal diet (Bieswal et al. 2004). The available evidence suggests that changes in adiposity and fat deposition in animal models result from a change in the endocrine environment of the offspring. However, these studies do not rule out the possibility of changes in the numbers of pre adipose cells available for differentiation through the regulation of C/EBP and PPAR function.
| Conclusions |
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| Acknowledgements |
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| Footnotes |
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